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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18581181_18583642_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18581181 - 18583642
Intron Length:
2462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTTTGTGACT
Flanking Amino Acid:
LRQLFGNAYPRKKGCGNSVQ
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.4
0.6
0.9
69.3
40.8
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
55
0.24
2
77.64
39.7

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025602
18579374 - 18622888
43515