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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18585236_18591621_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18585236 - 18591621
Intron Length:
6386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
LQNNKNQENNVRDLSIAYLL
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.1
0.81
0.7
85.2
29.2
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025602
18579374 - 18622888
43515
ENSAPLT00000019727
18574765 - 18622137
47373
ENSAPLT00000018457
18574765 - 18622888
48124
ENSAPLT00000011477
18574765 - 18622137
47373
ENSAPLT00000042367
18574765 - 18602907
28143