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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18591729_18594535_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18591729 - 18594535
Intron Length:
2807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AAGTTATTAACA
Flanking Amino Acid:
WFTEDEFFVPEFRILFPQLT
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
70.9
0.47
0.7
69.1
24.7
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
62
0.37
1.6
67.99
37.9

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011477
18574765 - 18622137
47373
ENSAPLT00000042367
18574765 - 18602907
28143
ENSAPLT00000025602
18579374 - 18622888
43515
ENSAPLT00000019727
18574765 - 18622137
47373
ENSAPLT00000018457
18574765 - 18622888
48124