Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18598719_18601364_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18598719 - 18601364

Intron Length:

2646

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAT

U12 Branch Point Sequence:

GATAATAGAATT

Flanking Amino Acid:

FLFNTGKFIYNYVHDINVTD

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

72.6

0.56

1.2

72.3

40.4

Major PPT

0.97

0.5

16.2

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

42.8

-0.4

1.8

58.09

38.1

Associated Gene:

Gene:

SLC38A9

Ensembl Gene ID:

ENSAPLG00000010983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025602

18579374 - 18622888

43515

ENSAPLT00000019727

18574765 - 18622137

47373

ENSAPLT00000018457

18574765 - 18622888

48124

ENSAPLT00000011477

18574765 - 18622137

47373