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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18602711_18602852_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18602711 - 18602852
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCCCTCTTAACA
Flanking Amino Acid:
ILSIPWGIKQAGFTSGIILI
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
76.5
0.6
0.8
72.4
30.9
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
70.9
0.65
1.3
72.02
40.3

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025602
18579374 - 18622888
43515
ENSAPLT00000019727
18574765 - 18622137
47373
ENSAPLT00000018457
18574765 - 18622888
48124
ENSAPLT00000011477
18574765 - 18622137
47373
ENSAPLT00000042367
18574765 - 18602907
28143