About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18602917_18603061_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18602917 - 18603061
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
CTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATCATTCACT
Flanking Amino Acid:
GYGKNSSIVTIFVIWNTMMG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.9
30.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.9
0.78
0.6
84.7
23
Minor 5ss
48
-0.2
2.5
61.7
43.4
Minor BPS
54.5
0.22
2
74.2
41.8

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019727
18574765 - 18622137
47373
ENSAPLT00000018457
18574765 - 18622888
48124
ENSAPLT00000011477
18574765 - 18622137
47373
ENSAPLT00000025602
18579374 - 18622888
43515