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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18603184_18603738_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18603184 - 18603738
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCCATTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTACTCATAATT
Flanking Amino Acid:
RLTSPTDRALIAPDHVLPAP
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
66.2
0.36
1
65.8
40
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
55
0.24
1.6
70.84
40.2

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019727
18574765 - 18622137
47373
ENSAPLT00000018457
18574765 - 18622888
48124
ENSAPLT00000011477
18574765 - 18622137
47373
ENSAPLT00000025602
18579374 - 18622888
43515