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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18603872_18612277_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18603872 - 18612277
Intron Length:
8406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
QFNPEDFKCKRPFHVEPTNI
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.9
0.74
0.6
81.7
23.2
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
SLC38A9
Ensembl Gene ID:
ENSAPLG00000010983
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025602
18579374 - 18622888
43515
ENSAPLT00000019727
18574765 - 18622137
47373
ENSAPLT00000018457
18574765 - 18622888
48124
ENSAPLT00000011477
18574765 - 18622137
47373