Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18612432_18622097_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

18612432 - 18622097

Intron Length:

9666

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTAGG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTCTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

TTTTACTTAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.9

44.2

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

85.2

0.79

0.6

84.8

22.9

Minor 5ss

34.1

-1.8

2.9

42.6

44.2

Minor BPS

88.1

1.27

1.2

101.4

24.3

Associated Gene:

Gene:

SLC38A9

Ensembl Gene ID:

ENSAPLG00000010983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011477

18574765 - 18622137

47373