About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18647684_18649530_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18647684 - 18649530
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTACAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCTGTACAA
Flanking Amino Acid:
IFLEARKFVYGTCIRPVVIY
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.7
43.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.5
0.39
0.9
63.4
37
Minor 5ss
47
-0.3
2.8
56.3
47.9
Minor BPS
49.2
-0
2.3
71.99
40.5

Associated Gene:

Gene:
DDX4
Ensembl Gene ID:
ENSAPLG00000011662
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012138
18630237 - 18659896
29660