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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18656043_18659190_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18656043 - 18659190
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGATTCTAAACT
Flanking Amino Acid:
NPVMSVNTQKSYEGSSSMNP
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
67.2
0.62
1.7
81.23
40.2

Associated Gene:

Gene:
DDX4
Ensembl Gene ID:
ENSAPLG00000011662
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012138
18630237 - 18659896
29660