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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18692944_18695913_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18692944 - 18695913
Intron Length:
2970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTCTTTTAATT
Flanking Amino Acid:
LTTTYTLYRKIKNTQGLILL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84
0.77
0.8
82.3
34
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
71
0.74
1.1
80.3
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023168
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042056
18689992 - 18704335
14344