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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18696099_18698096_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18696099 - 18698096
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTTTCTTAATT
Flanking Amino Acid:
ECVPITMESIEKFEPPEILS
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
78.6
0.64
0.8
71.2
38.6
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
83.9
1.14
1
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023168
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042056
18689992 - 18704335
14344