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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18698249_18700738_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18698249 - 18700738
Intron Length:
2490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
CATCTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATG
Flanking Amino Acid:
RYRNLYSNSSEIDNVAVTSE
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.4
42.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.2
0.59
0.9
68.4
37.1
Minor 5ss
44.7
-0.6
2.9
59.8
45
Minor BPS
48.5
-0.2
2.4
66.07
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023168
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042056
18689992 - 18704335
14344