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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18700905_18702589_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18700905 - 18702589
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTTTGAATA
Flanking Amino Acid:
REKTASTEDKAPSGKVDLWR
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
80
0.75
1
78.6
31
Major PPT
71.9
0.49
1
69.9
40.3
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
64.6
0.45
1.3
72.32
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023168
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042056
18689992 - 18704335
14344