Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18702673_18703192_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18702673 - 18703192

Intron Length:

520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATATATG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTTTAATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

ATTTTTTTAATA

Flanking Amino Acid:

GNRPVHLMWKLLGNIPHPGR

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

76.8

38.2

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

80.5

0.69

0.9

78.1

34.4

Minor 5ss

44.8

-0.6

2.7

59.2

45.4

Minor BPS

77.8

0.87

80.84

27.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023168

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042056

18689992 - 18704335

14344