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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18742959_18744115_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18742959 - 18744115
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TACTACAGAAAA
Flanking Amino Acid:
FYKTIDGNETAVSVDPSKTE
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
86.7
0.82
0.6
84.9
22.8
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
44.9
-0.3
1.9
57.4
40.8

Associated Gene:

Gene:
IL6ST
Ensembl Gene ID:
ENSAPLG00000011926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012487
18733733 - 18756949
23217