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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18744917_18745592_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18744917 - 18745592
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTGTAATT
Flanking Amino Acid:
PGNIQGTYLKGDIKPFKCYL
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
74.4
35.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
80
0.68
0.8
81.6
28.8
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
60
0.39
2
80
36.6

Associated Gene:

Gene:
IL6ST
Ensembl Gene ID:
ENSAPLG00000011926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012487
18733733 - 18756949
23217