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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18751074_18751156_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18751074 - 18751156
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
TTTTCTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
AGTGCCTTTACA
Flanking Amino Acid:
RIVNETNWMQVPSEDTASPR
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
85.8
0.81
0.8
80.4
31.7
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
62.1
0.37
1.8
70.58
41.1

Associated Gene:

Gene:
IL6ST
Ensembl Gene ID:
ENSAPLG00000011926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012487
18733733 - 18756949
23217