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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18752659_18754389_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18752659 - 18754389
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTTCTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATCACTAACT
Flanking Amino Acid:
NIYGITVTLGLPPEKPTNLS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
65.2
0.56
1.9
87.52
37

Associated Gene:

Gene:
IL6ST
Ensembl Gene ID:
ENSAPLG00000011926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012487
18733733 - 18756949
23217