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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18754702_18755858_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18754702 - 18755858
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTTTTTTAAAA
Flanking Amino Acid:
YLFWNICSLGVSGGLVQSCG
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
64.8
0.46
1.4
68.55
37.9

Associated Gene:

Gene:
IL6ST
Ensembl Gene ID:
ENSAPLG00000011926
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012487
18733733 - 18756949
23217