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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18802795_18808475_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18802795 - 18808475
Intron Length:
5681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ATTTTCTTACAA
Flanking Amino Acid:
RLPSLPRSPSGKNFQQMSTG
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
63
0.4
1.7
74.59
36.8

Associated Gene:

Gene:
ANKRD55
Ensembl Gene ID:
ENSAPLG00000012756
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013274
18795492 - 18844202
48711