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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18812598_18824323_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18812598 - 18824323
Intron Length:
11726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
AACTTCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CTTCTCTGAACT
Flanking Amino Acid:
FKTALHWAVQSGNRILCSII
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
71.8
0.49
0.9
62.4
38.8
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
67.9
0.64
1.5
82.07
39.1

Associated Gene:

Gene:
ANKRD55
Ensembl Gene ID:
ENSAPLG00000012756
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013274
18795492 - 18844202
48711