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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18828134_18831446_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18828134 - 18831446
Intron Length:
3313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATTGCTTCCACA
Flanking Amino Acid:
LHAATAEPDVRLLNVLLQQS
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
75.6
0.58
0.9
69.2
36.4
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
48.4
-0.1
2
65.52
41.3

Associated Gene:

Gene:
ANKRD55
Ensembl Gene ID:
ENSAPLG00000012756
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013274
18795492 - 18844202
48711