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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18835644_18844162_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18835644 - 18844162
Intron Length:
8519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTCTGCTTACTC
Flanking Amino Acid:
SSSSVFDQHKGDAAEEIDLT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
69.8
0.45
0.9
64.6
31
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
49.3
-0
2.1
61.11
45.2

Associated Gene:

Gene:
ANKRD55
Ensembl Gene ID:
ENSAPLG00000012756
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013274
18795492 - 18844202
48711