Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1883985_1884860_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1883985 - 1884860

Intron Length:

876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

CTGCTTTTCACA

Flanking Amino Acid:

LFHSSLLRLQIEELLKEVTL

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.3

27.8

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

83.7

0.76

0.7

77.7

24.2

Minor 5ss

35.1

-1.7

3.1

48.3

47.4

Minor BPS

49.1

-0

1.7

59.36

41.2

Associated Gene:

Gene:

NOL6

Ensembl Gene ID:

ENSAPLG00000003837

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033229

1883525 - 1916266

32742

ENSAPLT00000003982

1883525 - 1912199

28675