Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1888780_1889157_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1888780 - 1889157

Intron Length:

378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACACAG

5'SS Class:

major

3'SS Sequence:

TGTTTCCTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

CATCTCTCCACG

Flanking Amino Acid:

VAHSLPQTPEWPIDAEPPKH

Intron Amino Acid Position:

549

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.2

62.5

43.8

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

83.5

0.75

0.8

81.3

30.7

Minor 5ss

36.9

-1.5

3.1

47.4

Minor BPS

44.8

-0.5

49.76

Associated Gene:

Gene:

NOL6

Ensembl Gene ID:

ENSAPLG00000003837

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033229

1883525 - 1916266

32742

ENSAPLT00000003982

1883525 - 1912199

28675