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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_18932132_18932342_R

Intron Information:

Intron Rank:
149170
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18932132 - 18932342
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCACC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTGTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTGTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
62.4
42.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.6
0.53
0.9
70.2
35.2
Minor 5ss
58
0.27
2
70.5
39.7
Minor BPS
48.9
-0
2.2
68.51
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027749
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034509
18931362 - 18933443
2082