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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19133732_19133853_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19133732 - 19133853
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGTTGTTAATC
Flanking Amino Acid:
RSKWRSHDFYSHELPSPVES
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.5
0.53
0.9
67.3
39
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
61
0.33
2
73.21
38.6

Associated Gene:

Gene:
MAP3K1
Ensembl Gene ID:
ENSAPLG00000009424
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040090
19089280 - 19147477
58198
ENSAPLT00000009828
19089280 - 19146271
56992