Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19136869_19138023_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19136869 - 19138023

Intron Length:

1155

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TAATTTCTTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGTTTTTAATT

Flanking Amino Acid:

TILVKCADANSRTSQLSVST

Intron Amino Acid Position:

716

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

72.1

39.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.65

0.8

74.3

35.9

Minor 5ss

44.5

-0.6

3.2

64.5

46.9

Minor BPS

78.1

0.96

86.75

33.6

Associated Gene:

Gene:

MAP3K1

Ensembl Gene ID:

ENSAPLG00000009424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040090

19089280 - 19147477

58198

ENSAPLT00000009828

19089280 - 19146271

56992