Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19142164_19143382_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19142164 - 19143382

Intron Length:

1219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATCAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTGATCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TGTTGATAAATT

Flanking Amino Acid:

NYNLFIEWMAGGSVAHLLSK

Intron Amino Acid Position:

1341

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

74.2

36.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

78.7

0.65

0.9

70.4

40.9

Minor 5ss

39.7

-1.1

2.8

51.7

45.1

Minor BPS

48.2

-0

2.3

73.64

43.4

Associated Gene:

Gene:

MAP3K1

Ensembl Gene ID:

ENSAPLG00000009424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009828

19089280 - 19146271

56992

ENSAPLT00000040090

19089280 - 19147477

58198