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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19145267_19146510_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19145267 - 19146510
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
HSNHLALIFKIASATTAPSI
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
80.8
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.9
0.72
0.9
80.8
36.5
Minor 5ss
33
-1.9
3.4
45.9
49.3
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
MAP3K1
Ensembl Gene ID:
ENSAPLG00000009424
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040090
19089280 - 19147477
58198