About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19245405_19250678_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19245405 - 19250678
Intron Length:
5274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
NFPTPPSSTKSSLNFEKHSE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.2
29.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
48.9
-0.1
2.4
68.1
42.9
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
GPBP1
Ensembl Gene ID:
ENSAPLG00000006435
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006679
19231094 - 19262497
31404