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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19250803_19251262_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19250803 - 19251262
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTAAAAATCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATT
Flanking Amino Acid:
FDPNIGRPNGGHFGRKEKNG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
53.2
0.07
1.2
54.7
43.5
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
65.4
0.56
1.4
79.41
36.4

Associated Gene:

Gene:
GPBP1
Ensembl Gene ID:
ENSAPLG00000006435
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006679
19231094 - 19262497
31404