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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19252275_19253760_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19252275 - 19253760
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
QNKSLAAGVWEYPLNPKSRS
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
GPBP1
Ensembl Gene ID:
ENSAPLG00000006435
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006679
19231094 - 19262497
31404