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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19255541_19258080_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19255541 - 19258080
Intron Length:
2540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TAATATGTAATT
Flanking Amino Acid:
EDGNHARQEKDDDSFNLCNS
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.3
0.82
0.8
80.5
36.4
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
49.2
0.02
2.1
70.78
40.4

Associated Gene:

Gene:
GPBP1
Ensembl Gene ID:
ENSAPLG00000006435
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006679
19231094 - 19262497
31404