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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19258266_19261311_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19258266 - 19261311
Intron Length:
3046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AATTCTTTAATG
Flanking Amino Acid:
VLSSSLEAEHRLLKEMGWQE
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.5
0.62
1
78.2
33.8
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
74.2
0.62
1.2
70.85
36.4

Associated Gene:

Gene:
GPBP1
Ensembl Gene ID:
ENSAPLG00000006435
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006679
19231094 - 19262497
31404