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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19310820_19311723_R

Intron Information:

Intron Rank:
147550
Intron Class:
major
Intron Phase:
Intron Coordinates:
19310820 - 19311723
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
65
0.37
1.3
75
40
Major PPT
82.7
0.74
1
79.9
37.7
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026749
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031432
19309899 - 19311875
1977