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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19488854_19502281_F

Intron Information:

Intron Rank:
129815
Intron Class:
major
Intron Phase:
Intron Coordinates:
19488854 - 19502281
Intron Length:
13428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
75.8
35.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.6
0.89
0.7
85.3
29.1
Minor 5ss
37.7
-1.4
3
45.4
43.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019871
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034046
19488598 - 19503334
14737