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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19507840_19513140_F

Intron Information:

Intron Rank:
129817
Intron Class:
major
Intron Phase:
Intron Coordinates:
19507840 - 19513140
Intron Length:
5301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGAT
5'SS Class:
major
3'SS Sequence:
ATTGATCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCTTTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.5
39
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.4
0.62
0.9
69.6
40.8
Minor 5ss
29.2
-2.4
3.8
46
49.3
Minor BPS
58.8
0.35
2
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019871
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034292
19502355 - 19513517
11163