Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1960693_1960794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1960693 - 1960794

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGAGCA

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTCAA

U12 Branch Point Sequence:

TTTTTTTTTCCT

Flanking Amino Acid:

LTQGLQWCIQLFGCGSVAQI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

0.9

66.5

32.3

Major BPS

69.4

0.48

71.6

33.8

Major PPT

92.5

0.96

0.6

85.6

29.1

Minor 5ss

31.4

-2.1

3.2

46.3

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

AQP3

Ensembl Gene ID:

ENSAPLG00000004227

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004349

1960480 - 1964050

3571