About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19676610_19678842_F

Intron Information:

Intron Rank:
141419
Intron Class:
major
Intron Phase:
Intron Coordinates:
19676610 - 19678842
Intron Length:
2233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGCTTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.4
0.66
0.9
70.5
40
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
67.3
0.63
1.2
79.65
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026155
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042379
19665548 - 19678886
13339