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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19747511_19747625_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19747511 - 19747625
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TGTATACAAACA
Flanking Amino Acid:
MMLFNDGTFQVNFYHDHTKI
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
42.9
-0.5
2.1
58.66
40.4

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361