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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19747959_19748056_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19747959 - 19748056
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ACATCCTTATTT
Flanking Amino Acid:
GAHMSLLPDKKTVHYYPELG
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.6
0.8
0.7
79.7
25.9
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
65
0.55
1.6
75.08
42

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361