About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19749415_19749861_R


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
19749415 - 19749861

Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACA|GTAAGTGAA

5'SS Class:
major

3'SS Sequence:
TCCTGTGTAACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTAGAT

U12 Branch Point Sequence:
GCACCATTAAGT

Flanking Amino Acid:
KDKARYFDTHNRLAKEDEEI

Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.8
0.63
1
71.7
33.7

Major BPS
66.6
0.41
1.1
62.9
43.3

Major PPT
69.6
0.44
1
64.6
40.3

Minor 5ss
34.2
-1.8
3.2
45.6
43.6

Minor BPS
49.1
0.01
1.9
64.57
45

Associated Gene:

Gene:
PLK2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19747319 - 19752679
5361