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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19750010_19750099_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19750010 - 19750099
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
CTCCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GCTTTTTGAATC
Flanking Amino Acid:
EIIRHDFFVQGFTPDRLSAS
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80
0.68
0.7
75.1
27.1
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
57.8
0.22
1.4
62.98
37

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361