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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19750634_19751035_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19750634 - 19751035
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GCCTCTTTGATT
Flanking Amino Acid:
ARLEPLEHRRRTICGTPNYL
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
83.3
0.75
0.8
77.1
36
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
64.8
0.55
1.2
70.87
41.1

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361