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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19751530_19751726_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19751530 - 19751726
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
YILLEYCSRRSMAHILKARK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361