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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19751844_19752009_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19751844 - 19752009
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
CTTTTTCCACCC
Flanking Amino Acid:
RVAKPHQREKIDKEIELHRM
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
71.3
34.3
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
83
0.74
0.8
77.2
31.6
Minor 5ss
26.5
-2.7
3.1
32.6
42.2
Minor BPS
43.8
-0.4
2
58.19
41.2

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361