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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_19752118_19752463_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19752118 - 19752463
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAC
5'SS Class:
major
3'SS Sequence:
CGTGTCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCTGCTCTAATT
Flanking Amino Acid:
RYCRGKVLGKGGFAKCYEMT
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.3
35.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
77.3
0.62
0.9
73.5
37.1
Minor 5ss
29.6
-2.3
3.5
40.7
45.8
Minor BPS
51.2
0.12
1.8
67.5
44.3

Associated Gene:

Gene:
PLK2
Ensembl Gene ID:
ENSAPLG00000005719
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005954
19747319 - 19752679
5361